Biomedical Image Analysis

Sulje

Tarkenna hakuasi

Tutkimusryhmä

01.11.2016 -

A.I. Virtanen -instituutti, Terveystieteiden tiedekunta

Tiedot Ihmiset Julkaisut

Johtajat

Jussi Tohka

Professori

A.I. Virtanen -instituutti, Terveystieteiden tiedekunta

Aivokuvantaminen on luonut täysin uusia tapoja tarkastella elävissä aivoissa tapahtuvia muutoksia. Suuri osa näistä edistysakelista on seurausta kuva-analyysiin liittyvän algoritmiikan kehityksestä. Ryhmä kehittää laskennallisia algoritmeja aivokuvien sisältämän informaation analysoimiseksi.

Projektit

Yhteistyö

Avainsanat

aivokuvantaminen koneoppiminen kuva-analyysi neuroinformatiikka

Johtajat

Jussi Tohka

Professori

A.I. Virtanen -instituutti, Terveystieteiden tiedekunta

Vanhemmat tutkijat

Deepika Koundal

Yliopistotutkija

A.I. Virtanen -instituutti, Terveystieteiden tiedekunta

Tutkijatohtorit

Väitöskirjatutkijat

Tukihenkilöstö

Aija Sarvi

Project Controller

Talouspalvelut, Yliopistopalvelut

Muut ryhmän jäsenet

Robert Ciszek

Julkaisut

95 kappaletta

Tarkenna hakuasi

Biomedical Image Analysis

Johtajat

Jussi Tohka

Projektit

Yhteistyö

Avainsanat

Johtajat

Jussi Tohka

Vanhemmat tutkijat

Deepika Koundal

Tutkijatohtorit

Elaheh Moradi

Mastaneh Torkamani Azar

Maryam Hadji

Mithilesh Prakash

Väitöskirjatutkijat

Ali Farki

Gaurang Sharma

Zewen Zhuo

Tukihenkilöstö

Aija Sarvi

Muut ryhmän jäsenet

Epilepsy Diagnosis from EEG Signals Using Continuous Wavelet Transform-Based Depthwise Convolutional Neural Network Model

A Hybrid End-to-End Spatio-Temporal Attention Neural Network with Graph-Smooth Signals for EEG Emotion Recognition

ComBating inter‐site differences in field strength: harmonizing preclinical traumatic brain injury MRI data

Estimating Dementia Onset: AT(N) Profiles and Predictive Modeling in Mild Cognitive Impairment Patients

Generative Adversarial Networks (GANs) for Medical Image Processing: Recent Advancements

Intelligence and cortical morphometry: caveats in brain-behavior associations

Machine learning prediction of future amyloid beta positivity in amyloid-negative individuals

Multi-objective genetic algorithm for multi-view feature selection

No-Clean-Reference Image Super-Resolution: Application to Electron Microscopy

Optimizing Feature Selection for Binary Classification with Noisy Labels: A Genetic Algorithm Approach

Sauron U-Net: Simple automated redundancy elimination in medical image segmentation via filter pruning

Two-Stage Classification of Future Knee Osteoarthritis Severity After 8 Years Using MRI: Data from the Osteoarthritis Initiative

Volume electron microscopy in injured rat brain validates white matter microstructure metrics from diffusion MRI

Brain structure and phenotypic profile of superagers compared with age-matched older adults: a longitudinal analysis from the Vallecas Project

Distinct transcriptomic profiles in children prior to the appearance of type 1 diabetes-linked islet autoantibodies and following enterovirus infection

Identification of long noncoding RNAs with aberrant expression in prostate cancer metastases

Image data harmonization tools for the analysis of post-traumatic epilepsy development in preclinical multisite MRI studies

Node of Ranvier remodeling in chronic psychosocial stress and anxiety

Region-wise loss for biomedical image segmentation

Self-Supervised Super-Resolution Approach for Isotropic Reconstruction of 3D Electron Microscopy Images from Anisotropic Acquisition

SproutAngio: an open-source bioimage informatics tool for quantitative analysis of sprouting angiogenesis and lumen space

Unpacking the Broad Landscape of Intraoperative Stressors for Clinical Personnel: A Mixed-Methods Systematic Review

A multiscale tissue assessment in a rat model of mild traumatic brain injury

Acute Hippocampal Damage as a Prognostic Biomarker for Cognitive Decline but Not for Epileptogenesis after Experimental Traumatic Brain Injury

Automated tool detection with deep learning for monitoring kinematics and eye-hand coordination in microsurgery

Automatic Cerebral Hemisphere Segmentation in Rat MRI with Ischemic Lesions via Attention-based Convolutional Neural Networks

Convolutional Neural Networks Enable Robust Automatic Segmentation of the Rat Hippocampus in MRI After Traumatic Brain Injury

Hippocampal position and orientation as prognostic biomarkers for posttraumatic epileptogenesis: An experimental study in a rat lateral fluid percussion model

Histopathological modeling of status epilepticus-induced brain damage based on in vivo diffusion tensor imaging in rats

Individualized prediction of future cognition based on developmental changes in cortical anatomy

Methods and Measures for Mental Stress Assessment in Surgery: A Systematic Review of 20 Years of Literature

Multi-task longitudinal forecasting with missing values on Alzheimer’s disease

Near infrared spectroscopic evaluation of biochemical and crimp properties of knee joint ligaments and patellar tendon

The role of the meningeal lymphatic system in local meningeal inflammation and trigeminal nociception

What does FEXI measure?

gACSON software for automated segmentation and morphology analyses of myelinated axons in 3D electron microscopy

Acute thalamic damage as a prognostic biomarker for post-traumatic epileptogenesis

Automated joint skull-stripping and segmentation with Multi-Task U-Net in large mouse brain MRI databases

Comparing methods of detecting and segmenting unruptured intracranial aneurysms on TOF-MRAS: The ADAM Challenge

Comparison of Single and Multitask Learning for Predicting Cognitive Decline Based on MRI Data

Contribution of astrocytes to familial risk and clinical manifestation of schizophrenia

Cylindrical Shape Decomposition for 3D Segmentation of Tubular Objects

DeepACSON automated segmentation of white matter in 3D electron microscopy

EEG Emotion Recognition via Graph-based Spatio-Temporal Attention Neural Networks

Evaluation of machine learning algorithms for health and wellness applications: A tutorial

Functional and Structural Properties of Human Patellar Articular Cartilage in Osteoarthritis

Machine learning augmented near-infrared spectroscopy: In vivo follow-up of cartilage defects

Microstructural Tissue Changes in a Rat Model of Mild Traumatic Brain Injury

Neural-level associations of non-verbal pragmatic comprehension in young Finnish autistic adults

Quantitative Longitudinal Predictions of Alzheimer's Disease by Multi-Modal Predictive Learning

Quantitative dual contrast photon-counting computed tomography for assessment of articular cartilage health

Steerable3D: An ImageJ plugin for neurovascular enhancement in 3-D segmentation

The Alzheimer's Disease Prediction Of Longitudinal Evolution (TADPOLE) Challenge: Results after 1 Year Follow-up

Transfer Learning in Magnetic Resonance Brain Imaging: A Systematic Review

ADHD desynchronizes brain activity during watching a distracted multi-talker conversation

Automated Preprocessing of Near Infrared Spectroscopic Data

BV-2 Microglial Cells Overexpressing C9orf72 Hexanucleotide Repeat Expansion Produce DPR Proteins and Show Normal Functionality but No RNA Foci