
Leaders
We study the molecular, cellular and tissue mechanisms that contribute to formation of cancer and cancer treatment resistance. We focus on the molecular mechanisms behind the increased ability of cancer cells to tolerate stress, for example when cancer cells to form resistance to drugs. We also query the cancer growth patterns in tissue combining this to molecular information in order to better understand the mechanisms behind cancer cells’ ability to survive in the crossfire of different stress types. In our tissue analysis collaboration projects we search for better ways to image, visualise and quantitatively analyse histology with development of digital pathology, machine learning and AI tools. Our research aims at developing better diagnostic tools and novel cancer treatments.
News
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Researchers developed an AI-based method to replace chemical staining of tissue
Researchers from the University of Eastern Finland, the University of Turku, and Tampere University have developed an artificial intelligence-based… -
Targeting nuclear size: a new approach to reduce metastasis?
For over 150 years, scientists have used changes in nuclear size prognostically, because such changes strongly correlate with increased metastasis for… -
Academy of Finland grants funding to 12 Academy Projects in biosciences, health and environmental research at UEF
The Academy of Finland has granted funding to 12 Academy Projects in biosciences, health and environmental research at the University of Eastern…
Leaders
Post-doctoral Researchers
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Enkhzaya Batnasan
Postdoctoral ResearcherInstitute of Biomedicine, School of Medicine, Faculty of Health Sciences -
Annika Kohvakka
Postdoctoral ResearcherInstitute of Biomedicine, School of Medicine, Faculty of Health Sciences
Doctoral Researchers
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Sonja Koivukoski
Doctoral ResearcherInstitute of Biomedicine, School of Medicine, Faculty of Health Sciences -
Minttu Kärkkäinen
Doctoral ResearcherInstitute of Biomedicine, School of Medicine, Faculty of Health Sciences -
Hanqing Xia
Project ResearcherInstitute of Biomedicine, School of Medicine, Faculty of Health Sciences -
Erika Aikio
Project ResearcherInstitute of Biomedicine, School of Medicine, Faculty of Health Sciences
Technicians
Supporting Staff
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Melina Tulonen
TraineeInstitute of Biomedicine, School of Medicine, Faculty of Health Sciences -
Maria Haapakoski
TraineeInstitute of Biomedicine, School of Medicine, Faculty of Health Sciences
Other group members
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Siiri Sirviö
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Jenni Ruokolainen
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Salla Takkinen
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Kirsikka Wirtanen
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Heshani Jayasuriya Arachchige Dona
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Petra Taka-Eilola
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Nathaniel Tetteh
Publications
38 items-
A PEG-assisted membrane coating to prepare biomimetic mesoporous silicon for PET/CT imaging of triple-negative breast cancer
Wen, Huang; Martínez, María Gómez; Happonen, Emilia; Qian, Jing; Vallejo, Vanessa Gómez; Mendazona, Helena Jorge; Jokivarsi, Kimmo; Scaravilli, Mauro; Latonen, Leena; Llop, Jordi; Lehto, Vesa-Pekka; Xu, Wujun. 2024. International journal of pharmaceutics. 652: A1 Journal article (refereed), original research -
Long noncoding RNA EPCART regulates translation through PI3K/AKT/mTOR pathway and PDCD4 in prostate cancer
Kohvakka, Annika; Sattari, Mina; Nättinen, Janika; Aapola, Ulla; Gregorová, Pavlína; Tammela, Teuvo LJ; Uusitalo, Hannu; Sarin, L Peter; Visakorpi, Tapio; Latonen, Leena. 2024. Cancer gene therapy. 31: 1536-1546 A1 Journal article (refereed), original research -
Platinum-based drugs induce phenotypic alterations in nucleoli and Cajal bodies in prostate cancer cells
Batnasan, Enkhzaya; Kärkkäinen, Minttu; Koivukoski, Sonja; Sadeesh, Nithin; Tollis, Sylvain; Ruusuvuori, Pekka; Scaravilli, Mauro; Latonen, Leena. 2024. Cancer cell international. 24: . 29 A1 Journal article (refereed), original research -
RNA:han sitoutuvat proteiinit syövän lääkehoidossa ja -resistenssissä
Latonen, Leena. 2024. Duodecim. 140: 281-287 A2 Review article, Literature review, Systematic review -
Single cell and spatial transcriptomics highlight the interaction of club-like cells with immunosuppressive myeloid cells in prostate cancer
Kiviaho, Antti; Eerola, Sini K.; Kallio, Heini M. L.; Andersen, Maria K.; Hoikka, Miina; Tiihonen, Aliisa M.; Salonen, Iida; Spotbeen, Xander; Giesen, Alexander; Parker, Charles T. A.; Taavitsainen, Sinja; Hantula, Olli; Marttinen, Mikael; Hermelo, Ismaïl; Ismail, Mazlina; Midtbust, Elise; Wess, Maximilian; Devlies, Wout; Sharma, Abhibhav; Krossa, Sebastian; Häkkinen, Tomi; Afyounian, Ebrahim; Vandereyken, Katy; Kint, Sam; Kesseli, Juha; Tolonen, Teemu; Tammela, Teuvo L. J.; Viset, Trond; Størke. 2024. Nature communications. 15: . 9949 A1 Journal article (refereed), original research -
The ACROBAT 2022 Challenge: Automatic Registration Of Breast Cancer Tissue
Weitz, Philippe; Valkonen, Masi; Solorzano, Leslie; Carr, Circe; Kartasalo, Kimmo; Boissin, Constance; Koivukoski, Sonja; Kuusela, Aino; Rasic, Dusan; Feng, Yanbo; Pouplier, Sandra Sinius; Sharma, Abhinav; Eriksson, Kajsa Ledesma; Robertson, Stephanie; Marzahl, Christian; Gatenbee, Chandler D; Anderson, Alexander RA; Wodzinski, Marek; Jurgas, Artur; Marini, Niccolò; Atzori, Manfredo; Müller, Henning; Budelmann, Daniel; Weiss, Nick; Heldmann, Stefan; Lotz, Johannes; Wolterink, Jelmer M; De Santi,. 2024. Medical image analysis. 97: A1 Journal article (refereed), original research -
Virtuaalimaailma histologian oppimisen tukena
Mairinoja, Laura; Liimatainen, Kaisa; Koivukoski, Sonja; Latonen, Leena; Strauss, Leena; Ruusuvuori, Pekka. 2024. Yliopistopedagogiikka. 31: . B1 Non-refereed journal articles -
Virtuaalivärjäys mahdollistaa ympäristöystävällisempää histologiaa kemikaaleja vähentämällä
Koivukoski, Sonja; Ruusuvuori, Pekka; Latonen, Leena. 2024. Duodecim. 140: 1071-1078 A2 Review article, Literature review, Systematic review -
Virtual staining for histology by deep learning
Latonen, Leena; Koivukoski, Sonja; Khan, Umair; Ruusuvuori, Pekka. 2024. Trends in biotechnology. 42: 1177-1191 A2 Review article, Literature review, Systematic review -
A Multi-Stain Breast Cancer Histological Whole-Slide-Image Data Set from Routine Diagnostics
Weitz, Philippe; Valkonen, Masi; Solorzano, Leslie; Carr, Circe; Kartasalo, Kimmo; Boissin, Constance; Koivukoski, Sonja; Kuusela, Aino; Rasic, Dusan; Feng, Yanbo; Sinius Pouplier, Sandra; Sharma, Abhinav; Ledesma Eriksson, Kajsa; Latonen, Leena; Laenkholm, Anne-Vibeke; Hartman, Johan; Ruusuvuori, Pekka; Rantalainen, Mattias. 2023. Scientific data. 10: . 562 A1 Journal article (refereed), original research