Pantsar dynamics
Leaders
Pantsar dynamics is interested in the complex dynamic interplay of pharmaceutically relevant proteins and small molecule ligands, including both protein–protein interactions and protein–ligand interactions.
We are also actively involved in understanding the role of water molecules mediating or participating in these interactions.
We utilise molecular dynamics (MD) simulations and other computer-aided drug design methods to study these interactions in the atomic scale.
Our current main research topics are:
- Ras GTPases
- Protein Kinases
Both of these protein classes are dynamic key-signalling proteins of the complex cellular signalling networks machinery. Targeting these proteins have a huge potential in treatments of distinct diseases, including cancer. There also exists already approved drugs that are in clinical use for both of these protein classes.
News
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New collaboration with Cumulus Oncology in cancer drug discovery
Cooperation
Leaders
Doctoral Researchers
Publications
7 items-
In Silico Evaluation of the Thr58-Associated Conserved Water with KRAS Switch-II Pocket Binders
Leini, Renne; Pantsar, Tatu. 2023. Journal of chemical information and modeling. 63: 1490-1505 A1 Journal article (refereed), original research -
Decisive role of water and protein dynamics in residence time of p38α MAP kinase inhibitors
Pantsar, Tatu; Kaiser, Philipp D; Kudolo, Mark; Forster, Michael; Rothbauer, Ulrich; Laufer, Stefan A. 2022. Nature communications. 13: . 569 A1 Journal article (refereed), original research -
Regulatory spine RS3 residue of protein kinases: a lipophilic bystander or a decisive element in the small-molecule kinase inhibitor binding?
Shevchenko, Ekaterina; Pantsar, Tatu. 2022. Biochemical society transactions. 50: 633-648 A2 Review article, Literature review, Systematic review -
Addressing a Trapped High-Energy Water: Design and Synthesis of Highly Potent Pyrimidoindole-Based Glycogen Synthase Kinase-3ß Inhibitors
Andreev, Stanislav; Pantsar, Tatu; Tesch, Roberta; Kahlke, Niclas; El-Gokha, Ahmed; Ansideri, Francesco; Grätz, Lukas; Romasco, Jenny; Sita, Giulia; Geibel, Christian; Lämmerhofer, Michael; Tarozzi, Andrea; Knapp, Stefan; Laufer, Stefan A.; Koch, Pierre. 2021. Journal of medicinal chemistry. 2022; 65: 1283-1301 A1 Journal article (refereed), original research -
KRAS(G12C)-AMG 510 interaction dynamics revealed by all-atom molecular dynamics simulations
Pantsar, Tatu. 2020. Scientific reports. 10: 11992 A1 Journal article (refereed), original research -
The current understanding of KRAS protein structure and dynamics
Pantsar, Tatu. 2019. Computational and Structural Biotechnology Journal. 2020; 18: 189-198 A2 Review article, Literature review, Systematic review -
Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling
Pantsar, Tatu; Rissanen, Sami; Dauch, Daniel; Laitinen, Tuomo; Vattulainen, Ilpo; Poso, Antti. 2018. PLoS computational biology. 14: e1006458 A1 Journal article (refereed), original research