Ali Abdollahzadeh - UEFConnect

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Keywords

biophysics brain image analysis brain microstructure computer vision diffusion MRI electron microscopy

Publications

15/15 items

Editorial: Deep learning and neuroimage processing in understanding neurological diseases
Carvalho, Joana; Abdollahzadeh, Ali; Ferrari, Ricardo José, 2024, Frontiers in computational neuroscience, 18, 1523973. B1 Non-refereed journal articles
Node of Ranvier remodeling in chronic psychosocial stress and anxiety
Koskinen, Maija-Kreetta; Laine, Mikaela; Abdollahzadeh, Ali; Gigliotta, Adrien; Mazzini, Giulia; Journée, Sarah; Alenius, Varpu; Trontti, Kalevi; Tohka, Jussi; Hyytiä, Petri; Sierra, Alejandra; Hovatta, Iiris, 2023, Neuropsychopharmacology, 48, 10, 1532-1540, . A1 Journal article (refereed), original research
SproutAngio: an open-source bioimage informatics tool for quantitative analysis of sprouting angiogenesis and lumen space
Beter, M; Abdollahzadeh, A; Pulkkinen, HH; Huang, H; Orsenigo, F; Magnusson, PU; Ylä-Herttuala, S; Tohka, J; Laakkonen, JP, 2023, Scientific reports, 13, 1, 7279. A1 Journal article (refereed), original research
The role of the meningeal lymphatic system in local meningeal inflammation and trigeminal nociception
Mikhailov, Nikita; Virenque, Anaïs; Koroleva, Kseniia; Eme-Scolan, Elisa; Teleman, Matei; Abdollahzadeh, Ali; Giniatullina, Raisa; Gafurov, Oleg; Krivoshein, Georgii; Malm, Tarja; Hämäläinen, Riikka H; Sierra, Alejandra; Tohka, Jussi; Rua, Rejane; Noe, Francesco M; Giniatullin, Rashid, 2022, Scientific reports, 12, 1, 8804. A1 Journal article (refereed), original research
gACSON software for automated segmentation and morphology analyses of myelinated axons in 3D electron microscopy
Behanova, Andrea; Abdollahzadeh, Ali; Belevich, Ilya; Jokitalo, Eija; Sierra, Alejandra; Tohka, Jussi, 2022, Computer methods and programs in biomedicine, 220, 106802. A1 Journal article (refereed), original research
Automated 3D segmentation and morphometry of white matter ultrastructures
Abdollahzadeh, Ali, 2021, Publications of the University of Eastern Finland. Dissertations in Health Sciences. G5 Doctoral dissertation (article)
Cylindrical Shape Decomposition for 3D Segmentation of Tubular Objects
Abdollahzadeh, Ali; Sierra, Alejandra; Tohka, Jussi, 2021, IEEE access, 9, 23979-23995, . A1 Journal article (refereed), original research
DeepACSON automated segmentation of white matter in 3D electron microscopy
Abdollahzadeh, Ali; Belevich, Ilya; Jokitalo, Eija; Sierra, Alejandra; Tohka, Jussi, 2021, Communications biology, 4, 1, 179, . A1 Journal article (refereed), original research
Steerable3D: An ImageJ plugin for neurovascular enhancement in 3-D segmentation
Miocchi, Paolo; Sierra, Alejandra; Maugeri, Laura; Stefanutti, Eleonora; Abdollahzadeh, Ali; Mangini, Fabio; Moraschi, Marta; Bukreeva, Inna; Massimi, Lorenzo; Brun, Francesco; Tohka, Jussi; Gröhn, Olli; Mittone, Alberto; Bravin, Alberto; Nicaise, Charles; Giove, Federico; Cedola, Alessia; Fratini, Michela, 2021, Physica medica, 81, 197-209, . A1 Journal article (refereed), original research
Transfer Learning in Magnetic Resonance Brain Imaging: A Systematic Review
Valverde, Juan Miguel; Imani, Vandad; Abdollahzadeh, Ali; De Feo, Riccardo; Prakash, Mithilesh; Ciszek, Robert; Tohka, Jussi, 2021, Journal of imaging, 7, 4, 66, . A2 Review article, Literature review, Systematic review
BV-2 Microglial Cells Overexpressing C9orf72 Hexanucleotide Repeat Expansion Produce DPR Proteins and Show Normal Functionality but No RNA Foci
Rostalski, Hannah; Hietanen, Tomi; Leskelä, Stina; Behánová, Andrea; Abdollahzadeh, Ali; Wittrahm, Rebekka; Mäkinen, Petra; Huber, Nadine; Hoffmann, Dorit; Solje, Eino; Remes, Anne M; Natunen, Teemu; Takalo, Mari; Tohka, Jussi; Hiltunen, Mikko; Haapasalo, Annakaisa, 2020, Frontiers in neurology, 11, 550140, . A1 Journal article (refereed), original research
In vivo diffusion tensor imaging in acute and subacute phases of mild traumatic brain injury in rats
San Martín Molina, Isabel; Salo, Raimo A; Abdollahzadeh, Ali; Tohka, Jussi; Gröhn, Olli; Sierra, Alejandra, 2020, eNeuro, 7, 3, ENEURO.0476-19.2020, . A1 Journal article (refereed), original research
Multiscale Imaging Approach for Studying the Central Nervous System: Methodology and Perspective
Fratini, Michela; Abdollahzadeh, Ali; DiNuzzo, Mauro; Salo, Raimo; Maugeri, Laura; Cedola, Alessia; Giove, Federico; Gröhn, Olli; Tohka, Jussi; Sierra, Alejandra, 2020, Frontiers in neuroscience, 14, 72, . A2 Review article, Literature review, Systematic review
Automated 3D Axonal Morphometry of White Matter
Abdollahzadeh, A; Belevich, I; Jokitalo, E; Tohka, J; Sierra, A, 2019, Scientific reports, 9, 1, 6084, . A1 Journal article (refereed), original research
Local Adaptive Wiener Filtering for Class Averaging in Single Particle Reconstruction
Abdollahzadeh Ali, Acar Erman, Peltonen Sari, Ruotsalainen Ulla, 2017, Sharma Puneet, Bianchi Filippo Maria, Image Analysis 20th Scandinavian Conference, SCIA 2017, Tromsø, Norway, June 12-14, 2017, Proceedings, Part II, 233-244, Scandinavian Conference on Image Analysis. A4 Conference proceedings