ALI ABDOLLAHZADEH

Contact info

Research groups - UEF

• 
  Multiscale Imaging Group
• 
  Biomedical Image Analysis

Publications

• Abdollahzadeh, Ali (ed.) . 2021. Automated 3D segmentation and morphometry of white matter ultrastructures. Itä-Suomen yliopisto. Publications of the University of Eastern Finland. Dissertations in Health Sciences 662. 2021
• Abdollahzadeh, Ali; Belevich, Ilya; Jokitalo, Eija; Sierra, Alejandra; Tohka, Jussi. 2021. DeepACSON automated segmentation of white matter in 3D electron microscopy Communications biology 4 1: 179. 2021
• Abdollahzadeh, Ali; Sierra, Alejandra; Tohka, Jussi. 2021. Cylindrical Shape Decomposition for 3D Segmentation of Tubular Objects IEEE access 9: 23979-23995. 2021
• Miocchi, Paolo; Sierra, Alejandra; Maugeri, Laura; Stefanutti, Eleonora; Abdollahzadeh, Ali; Mangini, Fabio; Moraschi, Marta; Bukreeva, Inna; Massimi, Lorenzo; Brun, Francesco; Tohka, Jussi; Gröhn, Olli; Mittone, Alberto; Bravin, Alberto; Nicaise, Charles; Giove, Federico; Cedola, Alessia; Fratini, Michela. 2021. Steerable3D: An ImageJ plugin for neurovascular enhancement in 3-D segmentation Physica medica 81: 197-209. 2021
• Valverde, Juan Miguel; Imani, Vandad; Abdollahzadeh, Ali; De Feo, Riccardo; Prakash, Mithilesh; Ciszek, Robert; Tohka, Jussi. 2021. Transfer Learning in Magnetic Resonance Brain Imaging: A Systematic Review Journal of imaging 7 4: 66. 2021
• Fratini, Michela; Abdollahzadeh, Ali; DiNuzzo, Mauro; Salo, Raimo; Maugeri, Laura; Cedola, Alessia; Giove, Federico; Gröhn, Olli; Tohka, Jussi; Sierra, Alejandra. 2020. Multiscale Imaging Approach for Studying the Central Nervous System: Methodology and Perspective Frontiers in neuroscience 14: 72. 2020
• Rostalski, Hannah; Hietanen, Tomi; Leskelä, Stina; Behánová, Andrea; Abdollahzadeh, Ali; Wittrahm, Rebekka; Mäkinen, Petra; Huber, Nadine; Hoffmann, Dorit; Solje, Eino; Remes, Anne M; Natunen, Teemu; Takalo, Mari; Tohka, Jussi; Hiltunen, Mikko; Haapasalo, Annakaisa. 2020. BV-2 Microglial Cells Overexpressing C9orf72 Hexanucleotide Repeat Expansion Produce DPR Proteins and Show Normal Functionality but No RNA Foci Frontiers in neurology 11: 550140. 2020
• San Martín Molina, Isabel; Salo, Raimo A; Abdollahzadeh, Ali; Tohka, Jussi; Gröhn, Olli; Sierra, Alejandra. 2020. In vivo diffusion tensor imaging in acute and subacute phases of mild traumatic brain injury in rats eNeuro 7 3: ENEURO.0476-19.2020. 2020
• Abdollahzadeh, A; Belevich, I; Jokitalo, E; Tohka, J; Sierra, A. 2019. Automated 3D Axonal Morphometry of White Matter Scientific reports 9 1: 6084. 2019
• Abdollahzadeh Ali, Acar Erman, Peltonen Sari, Ruotsalainen Ulla. 2017. Local Adaptive Wiener Filtering for Class Averaging in Single Particle Reconstruction. In: Sharma Puneet, Bianchi Filippo Maria  (ed.) , Image Analysis 20th Scandinavian Conference, SCIA 2017, Tromsø, Norway, June 12-14, 2017, Proceedings, Part II. Springer. Lecture Notes in Computer Science 10270. s. 233-244. 2017