Baran Aydogan - UEFConnect

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Information Publications

Research groups

Computational NeuroImaging Research Group 01.09.2022 -

Keywords

brain connectivity brain stimulation microstructure neuroimaging

Publications

20/20 items

DTI-based fiber tractography: why not?
Aydogan, Dogu Baran; Leemans, Alexander; Dubois, Jessica; Dell’Acqua, Flavio; Maffei, Chiara, 2025, Brain structure and function, 230, 6, 84. B1 Non-refereed journal articles
Diffusion MRI GAN synthesizing fibre orientation distribution data using generative adversarial networks
Vellmer, Sebastian; Aydogan, Dogu Baran; Roine, Timo; Cacciola, Alberto; Picht, Thomas; Fekonja, Lucius S, 2025, Communications biology, 8, 1, 512. A1 Journal article (refereed), original research
Neuroimaging-Guided TMS–EEG for Real-Time Cortical Network Mapping
Ukharova, Elena; Sathyan, Sabin; Granö, Ida; O'meeghan, Isabella; Ahola, Oskari; Kainulainen, Noora; Laurinoja, Joonas; Partanen, Paula; Aydogan, Dogu Baran; Ilmoniemi, Risto J; Roine, Timo; Lioumis, Pantelis, 2025, Journal of visualized experiments, 220, e67339. A1 Journal article (refereed), original research
Optimization of TMS target engagement: current state and future perspectives
Lioumis, Pantelis; Roine, Timo; Granö, Ida; Aydogan, Dogu Baran; Ukharova, Elena; Souza, Victor H.; Kičić, Dubravko; Ilmoniemi, Risto J; Makris, Nikos, 2025, Frontiers in neuroscience, 19, 1517228. A1 Journal article (refereed), original research
Probabilistic tractography
Girard, Gabriel; Aydogan, Dogu Baran; Dell’Acqua, Flavio; Leemans, Alexander; Descoteaux, Maxime; Sotiropoulos, Stamatios N, 2025, Dell'Acqua, Flavio; Descoteaux, Maxime; Leemans, Alexander, Handbook of Diffusion MR Tractography: Imaging Methods, Biophysical Models, Algorithms and Applications, 257-274. B2 Book section
Real-time tractography: computation and visualization
Chamberland, Maxime; Yang, Joseph Yuan-Mou; Aydogan, Dogu Baran, 2025, Brain structure and function, 230, 5, 62. B1 Non-refereed journal articles
Translational network neuroscience: Nine roadblocks and possible solutions
Fekonja, Lucius S; Forkel, Stephanie J; Aydogan, Dogu Baran; Lioumis, Pantelis; Cacciola, Alberto; Lucas, Carolin Weiß; Tournier, Jacques-Donald; Vergani, Francesco; Ritter, Petra; Schenk, Robert; Shams, Boshra; Engelhardt, Melina Julia; Picht, Thomas, 2025, Network neuroscience, 9, 1, 352-370. B1 Non-refereed journal articles
MR beyond diagnostics at the ESMRMB annual meeting: MR theranostics and intervention
Hájek, Milan; Flögel, Ulrich; S Tavares, Adriana A; Nichelli, Lucia; Kennerley, Aneurin; Kahn, Thomas; Futterer, Jurgen J; Firsiori, Aikaterini; Grüll, Holger; Saha, Nandita; Couñago, Felipe; Aydogan, Dogu Baran; Caligiuri, Maria Eugenia; Faber, Cornelius; Bell, Laura C; Figueiredo, Patrícia; Vilanova, Joan C; Santini, Francesco; Mekle, Ralf; Waiczies, Sonia, 2024, Magnetic resonance materials in physics biology and medicine, 37, 3, 323-328. B1 Non-refereed journal articles
Real‐Time Tractography‐Assisted Neuronavigation for Transcranial Magnetic Stimulation
Aydogan, Dogu Baran; Souza, Victor H; Matsuda, Renan H; Lioumis, Pantelis; Ilmoniemi, Risto J, 2024, Human brain mapping, 2025; 46, 1, 1-15. A1 Journal article (refereed), original research
brainlife.io: a decentralized and open-source cloud platform to support neuroscience research
Hayashi, Soichi; Caron, Bradley A; Heinsfeld, Anibal Sólon; Vinci-Booher, Sophia; McPherson, Brent; Bullock, Daniel N; Bertò, Giulia; Niso, Guiomar; Hanekamp, Sandra; Levitas, Daniel; Ray, Kimberly; MacKenzie, Anne; Avesani, Paolo; Kitchell, Lindsey; Leong, Josiah K; Nascimento-Silva, Filipi; Koudoro, Serge; Willis, Hanna; Jolly, Jasleen K; Pisner, Derek; Zuidema, Taylor R; Kurzawski, Jan W; Mikellidou, Kyriaki; Bussalb, Aurore; Chaumon, Maximilien; George, Nathalie; Rorden, Christopher; Victory, 2024, Nature methods, 21, 5, 809-813. A1 Journal article (refereed), original research
DELMEP: a deep learning algorithm for automated annotation of motor evoked potential latencies
Milardovich, Diego; Souza, Victor H; Zubarev, Ivan; Tugin, Sergei; Nieminen, Jaakko O; Bigoni, Claudia; Hummel, Friedhelm C; Korhonen, Juuso T; Aydogan, Dogu B; Lioumis, Pantelis; Taherinejad, Nima; Grasser, Tibor; Ilmoniemi, Risto J, 2023, Scientific reports, 13, 1, 8225. A1 Journal article (refereed), original research
Depression core network-based individualized targeting for transcranial magnetic stimulation
Raij, Tuukka T; Komulainen, Emma; Aydogan, Dogu Baran; Pamilo, Siina; Isometsä, Erkki; Raij, Tommi, 2023, Brain stimulation, 16, 2, 619-627. A1 Journal article (refereed), original research
FreeSurfer 7 quality control: Key problem areas and importance of manual corrections
Vahermaa, Vesa; Aydogan, Dogu Baran; Raij, Tuukka; Armio, Reetta-Liina; Laurikainen, Heikki; Saramäki, Jari; Suvisaari, Jaana, 2023, Neuroimage, 279, 120306. A1 Journal article (refereed), original research
Limb-specific thalamocortical tracts are impaired differently in hemiplegic and diplegic subtypes of cerebral palsy
Jaatela, Julia; Aydogan, Dogu Baran; Nurmi, Timo; Vallinoja, Jaakko; Mäenpää, Helena; Piitulainen, Harri, 2023, Cerebral cortex, 33, 19, 10245-10257. A1 Journal article (refereed), original research
Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge
Girard, Gabriel; Rafael-Patiño, Jonathan; Truffet, Raphaël; Aydogan, Dogu Baran; Adluru, Nagesh; Nair, Veena A.; Prabhakaran, Vivek; Bendlin, Barbara B.; Alexander, Andrew L.; Bosticardo, Sara; Gabusi, Ilaria; Ocampo-Pineda, Mario; Battocchio, Matteo; Piskorova, Zuzana; Bontempi, Pietro; Schiavi, Simona; Daducci, Alessandro; Stafiej, Aleksandra; Ciupek, Dominika; Bogusz, Fabian; Pieciak, Tomasz; Frigo, Matteo; Sedlar, Sara; Deslauriers-Gauthier, Samuel; Kojčić, Ivana; Zucchelli, Mauro; Laghrissi, 2023, Neuroimage, 277, 120231. A1 Journal article (refereed), original research
Why is the Winner the Best?
Eisenmann, M.; Reinke, A.; Weru, V.; Tizabi, M. D.; Isensee, F.; Adler, T. J.; Ali, S.; Andrearczyk, V.; Aubreville, M.; Baid, U.; Bakas, S.; Balu, N.; Bano, S.; Bernal, J.; Bodenstedt, S.; Casella, A.; Cheplygina, V.; Daum, M.; De Bruijne, M.; Depeursinge, A.; Dorent, R.; Egger, J.; Ellis, D. G.; Engelhardt, S.; Ganz, M.; Ghatwary, N.; Girard, G.; Godau, P.; Gupta, A.; Hansen, L.; Harada, K.; Heinrich, M.; Heller, N.; Hering, A.; Huaulmé, A.; Jannin, P.; Kavur, A. E.; Kodym, O.; Kozubek, M.; Li, 2023, Mortensen, Eric, Proceedings: 2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition, 19955-19966, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. A4 Conference proceedings
Identification of Proprioceptive Thalamocortical Tracts in Children: Comparison of fMRI, MEG, and Manual Seeding of Probabilistic Tractography
Jaatela, Julia; Aydogan, Dogu Baran; Nurmi, Timo; Vallinoja, Jaakko; Piitulainen, Harri, 2022, Cerebral cortex, 32, 17, 3736-3751. A1 Journal article (refereed), original research
Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI
Maffei, Chiara; Girard, Gabriel; Schilling, Kurt G.; Aydogan, Dogu Baran; Adluru, Nagesh; Zhylka, Andrey; Wu, Ye; Mancini, Matteo; Hamamci, Andac; Sarica, Alessia; Teillac, Achille; Baete, Steven H.; Karimi, Davood; Yeh, Fang-Cheng; Yildiz, Mert E.; Gholipour, Ali; Bihan-Poudec, Yann; Hiba, Bassem; Quattrone, Andrea; Quattrone, Aldo; Boshkovski, Tommy; Stikov, Nikola; Yap, Pew-Thian; de Luca, Alberto; Pluim, Josien; Leemans, Alexander; Prabhakaran, Vivek; Bendlin, Barbara B.; Alexander, Andrew L, 2022, Neuroimage, 257, 119327. A1 Journal article (refereed), original research
Machine learning-based prediction of motor status in glioma patients using diffusion MRI metrics along the corticospinal tract
Shams, Boshra; Wang, Ziqian; Roine, Timo; Aydogan, Dogu Baran; Vajkoczy, Peter; Lippert, Christoph; Picht, Thomas; Fekonja, Lucius S, 2022, Brain communications, 4, 3, 1-17. A1 Journal article (refereed), original research
Network analysis shows decreased ipsilesional structural connectivity in glioma patients
Fekonja, Lucius S.; Wang, Ziqian; Cacciola, Alberto; Roine, Timo; Aydogan, D. Baran; Mewes, Darius; Vellmer, Sebastian; Vajkoczy, Peter; Picht, Thomas, 2022, Communications biology, 5, 1, 258. A1 Journal article (refereed), original research