Baran Aydogan - UEFConnect

Refine your search

Information Publications

Research groups

Computational NeuroImaging Research Group 01.09.2022 -

Keywords

brain connectivity brain stimulation microstructure neuroimaging

Publications

17/17 items

Diffusion MRI GAN synthesizing fibre orientation distribution data using generative adversarial networks
Vellmer, Sebastian; Aydogan, Dogu Baran; Roine, Timo; Cacciola, Alberto; Picht, Thomas; Fekonja, Lucius S. 2025. Communications biology. 8: . 512 A1 Journal article (refereed), original research
Optimization of TMS target engagement: current state and future perspectives
Lioumis, Pantelis; Roine, Timo; Granö, Ida; Aydogan, Dogu Baran; Ukharova, Elena; Souza, Victor H.; Kičić, Dubravko; Ilmoniemi, Risto J; Makris, Nikos. 2025. Frontiers in neuroscience. 19: . 1517228 A1 Journal article (refereed), original research
Probabilistic tractography
Girard, Gabriel; Aydogan, Dogu Baran; Dell’Acqua, Flavio; Leemans, Alexander; Descoteaux, Maxime; Sotiropoulos, Stamatios N. Teoksessa: Dell'Acqua, Flavio; Descoteaux, Maxime; Leemans, Alexander(toim.) , 2025. Handbook of Diffusion MR Tractography: Imaging Methods, Biophysical Models, Algorithms and Applications. s. 257-274. Academic press B2 Book section
Translational network neuroscience: Nine roadblocks and possible solutions
Fekonja, Lucius S; Forkel, Stephanie J; Aydogan, Dogu Baran; Lioumis, Pantelis; Cacciola, Alberto; Lucas, Carolin Weiß; Tournier, Jacques-Donald; Vergani, Francesco; Ritter, Petra; Schenk, Robert; Shams, Boshra; Engelhardt, Melina Julia; Picht, Thomas. 2025. Network neuroscience. 9: 352-370 A2 Review article, Literature review, Systematic review
MR beyond diagnostics at the ESMRMB annual meeting: MR theranostics and intervention
Hájek, Milan; Flögel, Ulrich; S Tavares, Adriana A; Nichelli, Lucia; Kennerley, Aneurin; Kahn, Thomas; Futterer, Jurgen J; Firsiori, Aikaterini; Grüll, Holger; Saha, Nandita; Couñago, Felipe; Aydogan, Dogu Baran; Caligiuri, Maria Eugenia; Faber, Cornelius; Bell, Laura C; Figueiredo, Patrícia; Vilanova, Joan C; Santini, Francesco; Mekle, Ralf; Waiczies, Sonia. 2024. Magnetic resonance materials in physics biology and medicine. 37: 323-328 B1 Non-refereed journal articles
Real‐Time Tractography‐Assisted Neuronavigation for Transcranial Magnetic Stimulation
Aydogan, Dogu Baran; Souza, Victor H; Matsuda, Renan H; Lioumis, Pantelis; Ilmoniemi, Risto J. 2024. Human brain mapping. 2025; 46: 1-15 A1 Journal article (refereed), original research
brainlife.io: a decentralized and open-source cloud platform to support neuroscience research
Hayashi, Soichi; Caron, Bradley A; Heinsfeld, Anibal Sólon; Vinci-Booher, Sophia; McPherson, Brent; Bullock, Daniel N; Bertò, Giulia; Niso, Guiomar; Hanekamp, Sandra; Levitas, Daniel; Ray, Kimberly; MacKenzie, Anne; Avesani, Paolo; Kitchell, Lindsey; Leong, Josiah K; Nascimento-Silva, Filipi; Koudoro, Serge; Willis, Hanna; Jolly, Jasleen K; Pisner, Derek; Zuidema, Taylor R; Kurzawski, Jan W; Mikellidou, Kyriaki; Bussalb, Aurore; Chaumon, Maximilien; George, Nathalie; Rorden, Christopher; Victory. 2024. Nature methods. 21: 809-813 A1 Journal article (refereed), original research
DELMEP: a deep learning algorithm for automated annotation of motor evoked potential latencies
Milardovich, Diego; Souza, Victor H; Zubarev, Ivan; Tugin, Sergei; Nieminen, Jaakko O; Bigoni, Claudia; Hummel, Friedhelm C; Korhonen, Juuso T; Aydogan, Dogu B; Lioumis, Pantelis; Taherinejad, Nima; Grasser, Tibor; Ilmoniemi, Risto J. 2023. Scientific reports. 13: . 8225 A1 Journal article (refereed), original research
Depression core network-based individualized targeting for transcranial magnetic stimulation
Raij, Tuukka T; Komulainen, Emma; Aydogan, Dogu Baran; Pamilo, Siina; Isometsä, Erkki; Raij, Tommi. 2023. Brain stimulation. 16: 619-627 A1 Journal article (refereed), original research
FreeSurfer 7 quality control: Key problem areas and importance of manual corrections
Vahermaa, Vesa; Aydogan, Dogu Baran; Raij, Tuukka; Armio, Reetta-Liina; Laurikainen, Heikki; Saramäki, Jari; Suvisaari, Jaana. 2023. Neuroimage. 279: A1 Journal article (refereed), original research
Limb-specific thalamocortical tracts are impaired differently in hemiplegic and diplegic subtypes of cerebral palsy
Jaatela, Julia; Aydogan, Dogu Baran; Nurmi, Timo; Vallinoja, Jaakko; Mäenpää, Helena; Piitulainen, Harri. 2023. Cerebral cortex. 33: 10245-10257 A1 Journal article (refereed), original research
Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge
Girard, Gabriel; Rafael-Patiño, Jonathan; Truffet, Raphaël; Aydogan, Dogu Baran; Adluru, Nagesh; Nair, Veena A.; Prabhakaran, Vivek; Bendlin, Barbara B.; Alexander, Andrew L.; Bosticardo, Sara; Gabusi, Ilaria; Ocampo-Pineda, Mario; Battocchio, Matteo; Piskorova, Zuzana; Bontempi, Pietro; Schiavi, Simona; Daducci, Alessandro; Stafiej, Aleksandra; Ciupek, Dominika; Bogusz, Fabian; Pieciak, Tomasz; Frigo, Matteo; Sedlar, Sara; Deslauriers-Gauthier, Samuel; Kojčić, Ivana; Zucchelli, Mauro; Laghrissi. 2023. Neuroimage. 277: A1 Journal article (refereed), original research
Why is the Winner the Best?
Eisenmann, M.; Reinke, A.; Weru, V.; Tizabi, M. D.; Isensee, F.; Adler, T. J.; Ali, S.; Andrearczyk, V.; Aubreville, M.; Baid, U.; Bakas, S.; Balu, N.; Bano, S.; Bernal, J.; Bodenstedt, S.; Casella, A.; Cheplygina, V.; Daum, M.; De Bruijne, M.; Depeursinge, A.; Dorent, R.; Egger, J.; Ellis, D. G.; Engelhardt, S.; Ganz, M.; Ghatwary, N.; Girard, G.; Godau, P.; Gupta, A.; Hansen, L.; Harada, K.; Heinrich, M.; Heller, N.; Hering, A.; Huaulmé, A.; Jannin, P.; Kavur, A. E.; Kodym, O.; Kozubek, M.; Li. Teoksessa: Mortensen, Eric(toim.) , 2023. Proceedings: 2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition. s. 19955-19966. IEEE A4 Conference proceedings
Identification of Proprioceptive Thalamocortical Tracts in Children: Comparison of fMRI, MEG, and Manual Seeding of Probabilistic Tractography
Jaatela, Julia; Aydogan, Dogu Baran; Nurmi, Timo; Vallinoja, Jaakko; Piitulainen, Harri. 2022. Cerebral cortex. 32: 3736-3751 A1 Journal article (refereed), original research
Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI
Maffei, Chiara; Girard, Gabriel; Schilling, Kurt G.; Aydogan, Dogu Baran; Adluru, Nagesh; Zhylka, Andrey; Wu, Ye; Mancini, Matteo; Hamamci, Andac; Sarica, Alessia; Teillac, Achille; Baete, Steven H.; Karimi, Davood; Yeh, Fang-Cheng; Yildiz, Mert E.; Gholipour, Ali; Bihan-Poudec, Yann; Hiba, Bassem; Quattrone, Andrea; Quattrone, Aldo; Boshkovski, Tommy; Stikov, Nikola; Yap, Pew-Thian; de Luca, Alberto; Pluim, Josien; Leemans, Alexander; Prabhakaran, Vivek; Bendlin, Barbara B.; Alexander, Andrew L. 2022. Neuroimage. 257: A1 Journal article (refereed), original research
Machine learning-based prediction of motor status in glioma patients using diffusion MRI metrics along the corticospinal tract
Shams, Boshra; Wang, Ziqian; Roine, Timo; Aydogan, Dogu Baran; Vajkoczy, Peter; Lippert, Christoph; Picht, Thomas; Fekonja, Lucius S. 2022. Brain communications. 4: 1-17 A1 Journal article (refereed), original research
Network analysis shows decreased ipsilesional structural connectivity in glioma patients
Fekonja, Lucius S.; Wang, Ziqian; Cacciola, Alberto; Roine, Timo; Aydogan, D. Baran; Mewes, Darius; Vellmer, Sebastian; Vajkoczy, Peter; Picht, Thomas. 2022. Communications biology. 5: . 258 A1 Journal article (refereed), original research