Dogu Aydogan
Academy Research Fellow
I lead the Computational NeuroImaging Research (CNIR) group. My research focuses on developing methods for medical image processing and connectivity analysis, particularly in the field of diffusion MRI-based tractography.
A.I. Virtanen Institute for Molecular Sciences, Faculty of Health Sciences
baran.aydogan@uef.fi | +358 50 473 8759
Research groups
Publications
11/11 items-
brainlife.io: a decentralized and open-source cloud platform to support neuroscience research
Hayashi, Soichi; Caron, Bradley A; Heinsfeld, Anibal Sólon; Vinci-Booher, Sophia; McPherson, Brent; Bullock, Daniel N; Bertò, Giulia; Niso, Guiomar; Hanekamp, Sandra; Levitas, Daniel; Ray, Kimberly; MacKenzie, Anne; Avesani, Paolo; Kitchell, Lindsey; Leong, Josiah K; Nascimento-Silva, Filipi; Koudoro, Serge; Willis, Hanna; Jolly, Jasleen K; Pisner, Derek; Zuidema, Taylor R; Kurzawski, Jan W; Mikellidou, Kyriaki; Bussalb, Aurore; Chaumon, Maximilien; George, Nathalie; Rorden, Christopher; Victory. 2024. Nature methods. [Epub ahead of print 11 April 2024]: 1-24 -
DELMEP: a deep learning algorithm for automated annotation of motor evoked potential latencies
Milardovich, Diego; Souza, Victor H; Zubarev, Ivan; Tugin, Sergei; Nieminen, Jaakko O; Bigoni, Claudia; Hummel, Friedhelm C; Korhonen, Juuso T; Aydogan, Dogu B; Lioumis, Pantelis; Taherinejad, Nima; Grasser, Tibor; Ilmoniemi, Risto J. 2023. Scientific reports. 13: . 8225 -
Depression core network-based individualized targeting for transcranial magnetic stimulation
Raij, Tuukka T; Komulainen, Emma; Aydogan, Dogu Baran; Pamilo, Siina; Isometsä, Erkki; Raij, Tommi. 2023. Brain stimulation. 16: 619-627 -
FreeSurfer 7 quality control: Key problem areas and importance of manual corrections
Vahermaa, Vesa; Aydogan, Dogu Baran; Raij, Tuukka; Armio, Reetta-Liina; Laurikainen, Heikki; Saramäki, Jari; Suvisaari, Jaana. 2023. Neuroimage. 279: -
Limb-specific thalamocortical tracts are impaired differently in hemiplegic and diplegic subtypes of cerebral palsy
Jaatela, Julia; Aydogan, Dogu Baran; Nurmi, Timo; Vallinoja, Jaakko; Mäenpää, Helena; Piitulainen, Harri. 2023. Cerebral cortex. 33: 10245-10257 -
Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge
Girard, Gabriel; Rafael-Patiño, Jonathan; Truffet, Raphaël; Aydogan, Dogu Baran; Adluru, Nagesh; Nair, Veena A.; Prabhakaran, Vivek; Bendlin, Barbara B.; Alexander, Andrew L.; Bosticardo, Sara; Gabusi, Ilaria; Ocampo-Pineda, Mario; Battocchio, Matteo; Piskorova, Zuzana; Bontempi, Pietro; Schiavi, Simona; Daducci, Alessandro; Stafiej, Aleksandra; Ciupek, Dominika; Bogusz, Fabian; Pieciak, Tomasz; Frigo, Matteo; Sedlar, Sara; Deslauriers-Gauthier, Samuel; Kojčić, Ivana; Zucchelli, Mauro; Laghrissi. 2023. Neuroimage. 277: -
Why is the Winner the Best?
Eisenmann, M.; Reinke, A.; Weru, V.; Tizabi, M. D.; Isensee, F.; Adler, T. J.; Ali, S.; Andrearczyk, V.; Aubreville, M.; Baid, U.; Bakas, S.; Balu, N.; Bano, S.; Bernal, J.; Bodenstedt, S.; Casella, A.; Cheplygina, V.; Daum, M.; De Bruijne, M.; Depeursinge, A.; Dorent, R.; Egger, J.; Ellis, D. G.; Engelhardt, S.; Ganz, M.; Ghatwary, N.; Girard, G.; Godau, P.; Gupta, A.; Hansen, L.; Harada, K.; Heinrich, M.; Heller, N.; Hering, A.; Huaulmé, A.; Jannin, P.; Kavur, A. E.; Kodym, O.; Kozubek, M.; Li. Teoksessa: Mortensen, Eric(toim.) , 2023. Proceedings: 2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition. s. 19955-19966. IEEE -
Identification of Proprioceptive Thalamocortical Tracts in Children: Comparison of fMRI, MEG, and Manual Seeding of Probabilistic Tractography
Jaatela, Julia; Aydogan, Dogu Baran; Nurmi, Timo; Vallinoja, Jaakko; Piitulainen, Harri. 2022. Cerebral cortex. 32: 3736-3751 -
Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI
Maffei, Chiara; Girard, Gabriel; Schilling, Kurt G.; Aydogan, Dogu Baran; Adluru, Nagesh; Zhylka, Andrey; Wu, Ye; Mancini, Matteo; Hamamci, Andac; Sarica, Alessia; Teillac, Achille; Baete, Steven H.; Karimi, Davood; Yeh, Fang-Cheng; Yildiz, Mert E.; Gholipour, Ali; Bihan-Poudec, Yann; Hiba, Bassem; Quattrone, Andrea; Quattrone, Aldo; Boshkovski, Tommy; Stikov, Nikola; Yap, Pew-Thian; de Luca, Alberto; Pluim, Josien; Leemans, Alexander; Prabhakaran, Vivek; Bendlin, Barbara B.; Alexander, Andrew L. 2022. Neuroimage. 257: -
Machine learning-based prediction of motor status in glioma patients using diffusion MRI metrics along the corticospinal tract
Shams, Boshra; Wang, Ziqian; Roine, Timo; Aydogan, Dogu Baran; Vajkoczy, Peter; Lippert, Christoph; Picht, Thomas; Fekonja, Lucius S. 2022. Brain communications. 4: 1-17