TANJA TARVAINEN

Yhteystiedot

Avainsanat

Opetustehtävät

Yhteiskunnalliset tehtävät

Tutkimusryhmät ja -projektit

Julkaisut SoleCRIS-palvelussa

• CRIS UEF SoleCRIS

Tutkimusryhmät - UEF

• 
  Laskennallisen fysiikan ja inversio-ongelmien tutkimusryhmä

Linkit

• Twitter @tmtarvainen
• LinkedIn Tanja Tarvainen
• Research gate Tanja Tarvainen's lab
• Orcid 0000-0002-7919-4033
• Linkki Google Scholar - Tanja Tarvainen
• Linkki Väitöskirja: Computational Method for Light Transport in Optical Tomography

Julkaisut

• Mozumder, Meghdoot; Hauptmann, Andreas; Nissilä, Ilkka; Arridge, Simon R.; Tarvainen, Tanja. 2022. A model-based iterative learning approach for diffuse optical tomography IEEE transactions on medical imaging [Epub ahead of print 4 March 2021]: 1-11. 2022
• Computationally efficient forward model for photoacoustic tomography. Sahlstrom, Teemu; Pulkkinen, Aki; Leskinen, Jarkko; Tarvainen, Tanja / Proc. SPIE, Opto-Acoustic Methods and Applications in Biophotonics V. 2021. 2021
• Fourier transform provides computational advantages for time-domain diffuse optical tomography. Mozumder, Meghdoot; Tarvainen, Tanja / Proceedings of SPIE: Diffuse Optical Spectroscopy and Imaging VIII. 2021. 2021
• Lunz, Sebastian; Hauptmann, Andreas; Tarvainen, Tanja; Schonlieb, Carola-Bibiane; Arridge, Simon. 2021. On Learned Operator Correction in Inverse Problems Siam journal on imaging sciences 14 1: 92-127. 2021
• Perturbation Monte Carlo in Quantitative Photoacoustic Tomography. Pulkkinen, Aki; Leino, Aleksi; Lunttila, Tuomas; Mozumder, Mehghdoot; Tarvainen, Tanja / Proc. SPIE, Opto-Acoustic Methods and Applications in Biophotonics V. 2021. 2021
• Sahlstrom, Teemu; Pulkkinen, Aki; Leskinen, Jarkko; Tarvainen, Tanja. 2021. Computationally Efficient Forward Operator for Photoacoustic Tomography Based on Coordinate Transformations IEEE transactions on ultrasonics ferroelectrics and frequency control 68 6: 2172-2182. 2021
• Compensating modeling errors of diffusion approximation in quantitative photoacoustic tomography using a Bayesian approach. Hänninen, Niko; Pulkkinen, Aki; Leino, Aleksi; Tarvainen, Tanja / Proc. SPIE, Opto-Acoustic Methods and Applications in Biophotonics V. 2021. 2021
• Mozumder, Meghdoot; Tarvainen, Tanja. 2020. Evaluation of temporal moments and Fourier transformed data in time-domain diffuse optical tomography Journal of the optical society of america a: optics image science and vision 37 12: 1845-1856. 2020
• Sahlström, Teemu; Pulkkinen, Aki; Tick, Jenni; Leskinen, Jarkko; Tarvainen, Tanja. 2020. Modeling of Errors due to Uncertainties in Ultrasound Sensor Locations in Photoacoustic Tomography IEEE transactions on medical imaging 39 6: 2140-2150. 2020
• Mozumder, Meghdoot; Tarvainen, Tanja. 2020. Time-domain diffuse optical tomography utilizing truncated Fourier series approximation Journal of the optical society of america a: optics image science and vision 37 2: 182-191. 2020
• Xu, Wu jun; Leskinen, Jarkko; Tick, Jenni; Happonen, Emilia; Tarvainen, Tanja; Lehto, Vesa-Pekka. 2020. Black Mesoporous Silicon as a Contrast Agent for LED-Based 3D Photoacoustic Tomography Acs applied materials and interfaces 12 5: 5456-5461. 2020
• Modelling of uncertainties in ultrasound sensor locations in photoacoustic tomography. Sahlström, Teemu; Pulkkinen, Aki; Tick, Jenni; Leskinen, Jarkko; Tarvainen, Tanja / Photons Plus Ultrasound: Imaging and Sensing 2020. 2020. 2020
• Hänninen, Niko; Pulkkinen, Aki; Leino, Aleksi; Tarvainen, Tanja. 2020. Application of diffusion approximation in quantitative photoacoustic tomography in the presence of low-scattering regions Journal of quantitative spectroscopy and radiative transfer 250: 107065. 2020
• A truncated Fourier-transform based approach for time-domain diffuse optical tomography. Mozumder, Meghdoot; Tarvainen, Tanja / Proceedings Biophotonics Congress: Biomedical Optics 2020 (Translational, Microscopy, OCT, OTS, BRAIN). 2020. 2020
• Leino, Aleksi; Lunttila, Tuomas; Mozumder, Meghdoot; Pulkkinen, Aki; Tarvainen, Tanja. 2020. Perturbation Monte Carlo Method for Quantitative Photoacoustic Tomography IEEE transactions on medical imaging 39 10: 2985-2995. 2020
• Photoacoustic tomography setup using LED illumination. Leskinen, Jarkko; Pulkkinen, Aki; Tick, Jenni; Tarvainen, Tanja / Opto-Acoustic Methods and Applications in Biophotonics IV, 110770Q. 2019. 2019
• Tick, Jenni; Pulkkinen, Aki; Tarvainen, Tanja. 2019. Modelling of errors due to speed of sound variations in photoacoustic tomography using a Bayesian framework Biomedical physics & engineering express 6 1: 015003. 2019
• Quantitative photoacoustic tomography in Bayesian framework. Tarvainen, Tanja / Radon Transform - The First 100 Years and Beyond. 2019. 2019
• Modelling of errors and uncertainties in photoacoustic tomography using a Bayesian framework. Tarvainen, Tanja; Sahlström, Teemu-Taneli; Tick, Jenni; Pulkkinen, Aki / Proceedings Imaging and Applied Optics 2019. 2019. 2019
• Leino, Aleksi A; Pulkkinen, Aki; Tarvainen Tanja. 2019. ValoMC: a Monte Carlo software and MATLAB toolbox for simulating light transport in biological tissue OSA Continuum 2 3: 957-972. 2019
• Koponen, Eero; Leskinen, Jarkko; Tarvainen, Tanja; Pulkkinen, Aki. 2019. Acoustic pressure field estimation methods for synthetic schlieren tomography Journal of the acoustical society of america 145 4: 2470. 2019
• Characterization of ultrasound fields using a potential optical flow based synthetic schlieren tomography. Eero Koponen, Jarkko Leskinen, Tanja Tarvainen, Aki Pulkkinen / Mathematics in Imaging. 2019. 2019
• Hänninen, Niko; Pulkkinen, Aki; Tarvainen, Tanja. 2018. Image Reconstruction with Reliability Assessment in Quantitative Photoacoustic Tomography Journal of imaging 4 12: 148. 2018
• Photoacoustic image reconstruction in Bayesian framework. Tick, Jenni; Pulkkinen, Aki, Lucka, Felix; Ellwood, Robert; Cox, Ben T; Arridge, Simon R; Tarvainen, Tanja / Photons Plus Ultrasound: Imaging and Sensing 2018. 2018. 2018
• Raumonen, Pasi; Tarvainen, Tanja. 2018. Segmentation of vessel structures from photoacoustic images with reliability assessment. Biomedical Optics Express 9 7: 2887-2904. 2018
• Tick, Jenni; Pulkkinen, Aki; Lucka, Felix; Ellwood, Robert; Cox, Ben T; Kaipio, Jari P; Arridge, Simon R; Tarvainen, Tanja. 2018. Three dimensional photoacoustic tomography in Bayesian framework JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 144 4: 2061. 2018
• Tick Jenni, Pulkkinen Aki, Tarvainen Tanja. 2017. Bayesian approach to image reconstruction in photoacoustic tomography. Proceedings of SPIE 10064 March 3, 2017: 100643M. 2017
• Toivanen JM, Tarvainen T, Huttunen JMJ, Savolainen T, Pulkkinen A, Orlande HRB, Kaipio JP, Kolehmainen V. 2017. Thermal tomography utilizing truncated Fourier series approximation of the heat diffusion equation. INTERNATIONAL JOURNAL OF HEAT AND MASS TRANSFER 108 Part A: 860-867. 2017
• Tick Jenni, Pulkkinen Aki, Tarvainen Tanja. 2017. Photoacoustic image reconstruction with uncertainty quantification. Teoksessa: Eskola Hannu, Väisänen Outi, Viik Jari, Hyttinen Jari (toim.), EMBEC & NBC 2017. Springer. IFMBE Proceedings 65. s. 113-116. 2017
• Pulkkinen Aki, Cox Ben T, Arridge Simon R, Kaipio Jari P, Tarvainen Tanja. 2017. Estimation and uncertainty quantification of optical properties directly from the photoacoustic time series. Proceedings of SPIE 10064 March 3, 2017: 100643N. 2017
• Tarvainen Tanja, Pulkkinen Ari, Cox Ben T, Arridge Simon R. 2017. Utilising the radiative transfer equation in quantitative photoacoustic tomography. Proceedings of SPIE 10064 March 3, 2017: 100643E. 2017
• Nykanen O, Pulkkinen A, Tarvainen T. 2017. Quantitative photoacoustic tomography augmented with surface light measurements. Biomedical Optics Express 8 10: 4380-4395. 2017
• Image reconstruction and uncertainty quantification in photoacoustic tomography. Tick, Jenni; Pulkkinen, Aki; Tarvainen, Tanja / Mathematics in Imaging 2017. 2017. 2017
• Hannukainen A, Hyvönen N, Majander H, Tarvainen T. 2016. Efficient Inclusion of Total Variation Type Priors in Quantitative Photoacoustic Tomography. SIAM Journal on Imaging Sciences 9 3: 1132-1153. 2016
• Mozumder Meghdoot, Tarvainen Tanja, Arridge Simon, Kaipio Jari P, d'Andrea Cosimo, Kolehmainen Ville. 2016. Approximate marginalization of absorption and scattering in fluorescence diffuse optical tomography. INVERSE PROBLEMS AND IMAGING 10 1: 227-246. 2016
• Pulkkinen Aki, Cox Ben T, Arridge Simon R, Goh Hwan, Kaipio Jari P, Tarvainen Tanja. 2016. Direct Estimation of Optical Parameters From Photoacoustic Time Series in Quantitative Photoacoustic Tomography. IEEE TRANSACTIONS ON MEDICAL IMAGING 35 11: 2497-2508. 2016
• Pulkkinen Aki, Cox Ben T, Arridge Simon R, Kaipio Jari P, Tarvainen Tanja. 2016. Bayesian parameter estimation in spectral quantitative photoacoustic tomography. Teoksessa: Oraevsky Alexander A, Wang Lihong V (toim.), SPIE Proceedings 9708: Photons Plus Ultrasound: Imaging and Sensing. Proceedings of SPIE 9708. s. 97081G. 2016
• Tamminen J, Tarvainen T, Siltanen S. 2016. The D-bar method for diffuse optical tomography: a computational study. Experimental Mathematics Published online: 05 Aug 2016: 1-16. 2016
• Tarvainen Tanja, Pulkkinen Aki, Cox Beb T, Kaipio Jari P, Arridge Simon R. 2016. Image reconstruction with noise and error modelling in quantitative photoacoustic tomography. Teoksessa: Oraevsky Alexander A, Wang Lihong V (toim.), SPIE Proceedings 9708: Photons Plus Ultrasound: Imaging and Sensing. Proceedings of SPIE 9708. s. 97083Q. 2016
• Tarvainen Tanja. 2016. Ihmisen kuvantaminen valoa käyttäen. ARKHIMEDES 2: 14-19. 2016
• Tick Jenni, Pulkkinen Aki, Tarvainen Tanja. 2016. Image reconstruction with uncertainty quantification in photoacoustic tomography. The Journal of the Acoustical Society of America 139 4: 1951-1961. 2016
• Vauhkonen Marko, Tarvainen Tanja, Lähivaara Timo. 2016. Inverse Problems. Teoksessa: Seppo Pohjolainen (toim.) Mathematical Modelling. Springer. s. 207-227. 2016
• Pulkkinen Aki, Cox Ben T, Arridge Simon R, Kaipio Jari P, Tarvainen Tanja. 2015. Quantitative photoacoustic tomography using illuminations from a single direction. Journal of Biomedical Optics 20 3: 036015. 2015
• Lehtikangas Ossi, Tarvainen Tanja, Kim Arnold D, Arridge Simon R. 2015. Finite element approximation of the radiative transport equation in a medium with piece-wise constant refractive index. JOURNAL OF COMPUTATIONAL PHYSICS 282 (2015): 345-359. 2015
• Mozumder Meghdoot, Tarvainen Tanja, Seppänen Aku, Nissilä Ilkka, Arridge Simon R, Kolehmainen Ville. 2015. Nonlinear approach to difference imaging in diffuse optical tomography. Journal of Biomedical Optics 20 10. 2015
• Arridge Simon R., Kaipio Jari P., Kolehmainen Ville, Tarvainen Tanja. 2015. Optical Imaging. Teoksessa: Otmar Scherzer (toim.) Handbook of Mathematical Methods in Imaging. SPRINGER. s. 1033-1079. 2015
• Koponen Janne, Huttunen Tomi, Tarvainen Tanja, Kaipio Jari P. 2014. Bayesian approximation error approach in full-wave ultrasound tomography. IEEE TRANSACTIONS ON ULTRASONICS, FERROELECTRICS, AND FREQUENCY CONTROL 61 10: 1627-1637. 2014
• Mozumder Meghdoot, Tarvainen Tanja, Arridge Simon R, Kaipio Jari, Kolehmainen Ville. 2014. Compensation of optode position and sensitivity errors in diffuse optical tomography: Meghdoot Mozumder, Tanja Tarvainen, Simon R. Arridge, Jari Kaipio, and Ville Kolehmainen, Compensation of optode position and sensitivity errors in diffuse optical tomography. BM3A.76. 2014
• Mozumder Meghdoot, Tarvainen Tanja, Kaipio Jari P, Arridge Simon R, Kolehmainen Ville. 2014. Compensation of modeling errors due to unknown domain boundary in diffuse optical tomography. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A 31 8: 1847-1855. 2014
• Pulkkinen A, Cox BT, Arridge SR, Kaipio JP, Tarvainen T. 2014. A Bayesian approach to spectral quantitative photoacoustic tomography. INVERSE PROBLEMS 30 6: 065012. 2014
• Pulkkinen Aki, Kolehmainen Ville, Kaipio Jari P, Cox Benjamin T, Arridge Simon R, Tarvainen Tanja. 2014. APPROXIMATE MARGINALIZATION OF UNKNOWN SCATTERING IN QUANTITATIVE PHOTOACOUSTIC TOMOGRAPHY. INVERSE PROBLEMS AND IMAGING 8 3: 811-829. 2014
• Toivanen Jussi, Tarvainen Tanja, Huttunen Janne, Savolainen Tuomo, Orlande Helcio, Kaipio Jari, Kolehmainen Ville. 2014. 3D thermal tomography with experimental measurement data. INTERNATIONAL JOURNAL OF HEAT AND MASS TRANSFER 78: 1126-1134. 2014
• Saratoon T, Tarvainen T, Arridge SR, Cox BT. 2013. 3D quantitative photoacoustic tomography using the δ-Eddington approximation: Oraevsky AA, Wang LV, Proc. SPIE 8581, Photons Plus Ultrasound: Imaging and Sensing 2013. Proceedings of SPIE 8581. 858101. 2013
• Tarvainen Tanja, Pulkkinen Aki, Cox Ben T, Kaipio Jari P, Arridge Simon R. 2013. Image reconstruction in quantitative photoacoustic tomography using the radiative transfer equation and the diffusion approximation: Ntziachristos Vasilis, Lin Charles P, Proc. SPIE 8800, Opto-Acoustic Methods and Applications. Proceedings of SPIE. 880006. 2013
• Tarvainen Tanja, Pulkkinen Aki, Cox Ben T, Kaipio Jari P, Arridge Simon R. 2013. Bayesian Image Reconstruction in Quantitative Photoacoustic Tomography. IEEE TRANSACTIONS ON MEDICAL IMAGING 32 12: 2287-2298. 2013
• Tarvainen Tanja, Kolehmainen Ville, Lehtikangas Ossi, Arridge Simon R, Kaipio Jari P. 2013. Utilising the coupled radiative transfer - diffusion model in diffuse optical tomography: Taroni P, Dehghani H, Proc. SPIE 8799, Diffuse Optical Imaging IV. Proceedings of SPIE. 879907. 2013
• Saratoon Teedah, Tarvainen Tanja, Cox Ben T, Arridge Simon R. 2013. A gradient-based method for quantitative photoacoustic tomography using the radiative transfer equation. INVERSE PROBLEMS 29: 075006. 2013
• Koponen Janne, Huttunen Tomi, Tarvainen Tanja, Kaipio Jari. 2013. Approximation error method for full-wave tomography: -, Proceedings of Meetings on Acoustics, ICA 2013 Montreal.Acoustical Society of America. Proceedings of meetings on acoustics Acoustical Society of America. 075004. 2013
• Pulkkinen Aki, Tarvainen Tanja. 2013. Truncated Fourier-series approximation of the time-domain radiative transfer equation using finite elements. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A 30 3: 470-478. 2013
• M. Mozumder, T. Tarvainen, S. R. Arridge, J. P. Kaipio, V. Kolehmainen. 2013. Compensation of optode sensitivity and position errors in diffuse optical tomography using the approximation error approach. Biomedical Optics Express 4 10: 2015-2031. 2013
• Lehtikangas Ossi, Tarvainen Tanja. 2013. Utilizing Fokker-Planck-Eddington approximation in modeling light transport in tissues-like media: Taroni P, Dehghani H, Proc. SPIE 8799, Diffuse Optical Imaging IV. Proceedings of SPIE. 879908. 2013
• Lehtikangas Ossi, Tarvainen Tanja. 2013. Hybrid forward-peaked-scattering-diffusion approximations for light propagation in turbid media with low-scattering regions. JOURNAL OF QUANTITATIVE SPECTROSCOPY & RADIATIVE TRANSFER 116: 132-144. 2013
• Janne Koponen, Tomi Huttunen, Tanja Tarvainen, Jari Kaipio. 2013. Mallinnusvirheiden huomioiminen akustisessa tomografiassa: Hiipakka M, Tahvanainen H, Lokki T, Akustiikkapäivät 2013. Akustiikkapäivät. 255-260. 2013
• Pulkkinen Aki, Tarvainen Tanja. 2013. Approximating the time-domain radiative transfer equation using truncated Fourier series: Paola Taroni, Hamid Dehghani, SPIE/OSA European Conferences on Biomedical Optics 2013. Proceedings of SPIE 8799. 87990U. 2013
• Tarvainen Tanja, Kolehmainen Ville, Arridge Simon R., Kaipio Jari P,. 2012. Utilising approximation error modelling in linear reconstruction in diffuse optical tomography. Teoksessa: Optical Society of America (toim.), Biomedical Optics and Digital Holography and Three-Dimensional Imaging. ss. BTu3A.41. 2012
• Toivanen Jussi M, Kolehmainen Ville, Tarvainen Tanja, Orlande Helcio RB, Kaipio Jari P. 2012. Simultaneous estimation of spatially distributed thermal conductivity, heat capacity and surface heat transfer coefficient in thermal tomography. INTERNATIONAL JOURNAL OF HEAT AND MASS TRANSFER 55: 7958-7968. 2012
• Tarvainen T, Cox BT, Kaipio JP, Arridge SR. 2012. Reconstructing absorption and scattering distributions in quantitative photoacoustic tomography INVERSE PROBLEMS 28 8: 084009. 2012
• Ossi Lehtikangas, Tanja Tarvainen, Arnold D. Kim. 2012. Modeling boundary measurements of scattered light using the corrected diffusion approximation Biomedical Optics Express 3 3: 552-571. 2012
• Lehtikangas Ossi, Tarvainen Tanja, Kim Arnold. 2012. Modeling light propagation in tissues using the corrected diffusion approximation. Teoksessa: Optical Society of America (toim.), Biomedical Optics and Digital Holography and Three-Dimensional Imaging. ss. BTu3A.4. 2012
• Kolehmainen, Ville; Schweiger, Martin; Nissilä, Ilkka; Tarvainen, Tanja; Arridge, Simon R.; Kaipio, Jari P.. 2012. Approximation Errors and Model Reduction in Three-Dimensional Diffuse Optical Tomography: -, Biomedical Optics and Digital Holography and Three-Dimensional Imaging.Optical Society of America. BTu3A.5. 2012
• Heiskala Juha, Kolehmainen Ville, Tarvainen Tanja, Kaipio Jari P, Arridge Simon R. 2012. Approximation error method can reduce artifacts due to scalp blood flow in optical brain activation imaging. Journal of Biomedical Optics 17 9: 096012. 2012
• Cox Ben, Tarvainen Tanja, Arridge Simon. 2011. Multiple illumination quantitative photoacoustic tomography using transport and diffusion models: Bal Guillaume, Finch David, Kuchment Peter, Schotland John, Stefanov Plamen, Uhlmann Gunther, Tomography and Inverse Transport Theory. Contemporary Mathematics 559. 1-12. 2011
• Kolehmainen V, Tarvainen T, Arridge S. R. and Kaipio J. P.. 2011. Marginalization of uninteresting distributed parameters in inverse problems - Application to diffuse optical tomography. International Journal for Uncertainty Quantification 1 1: 1-17. 2011
• Mohan P Surya, Tarvainen Tanja, Schweiger Martin, Pulkkinen Aki, Arridge Simon R. 2011. Variable order spherical harmonic expansion scheme for the radiative transport equation using finite elements. JOURNAL OF COMPUTATIONAL PHYSICS 230: 7364 - 7383. 2011
• Simon R. Arridge, Jari P. Kaipio, Ville Kolehmainen and Tanja Tarvainen. 2011. Optical Imaging: O. Scherzer, Handbook of Mathematical Methods in Imaging. Springer Reference. 735-780. 2011
• Tarvainen Tanja, Kolehmainen Ville, Arridge Simon R, Kaipio Jari P. 2011. Image reconstruction in diffuse optical tomography using the coupled radiative transport - diffusion model JOURNAL OF QUANTITATIVE SPECTROSCOPY & RADIATIVE TRANSFER 112: 2600-2608. 2011
• Tanja Tarvainen, Ville Kolehmainen, Aki Pulkkinen, Marko Vauhkonen, Martin Schweiger, Simon R Arridge, Jari P Kaipio. 2010. An approximation error approach for compensating for modelling errors between the radiative transfer equation and the diffusion approximation in diffuse optical tomography INVERSE PROBLEMS 26: 015005 (18pp). 2010
• Tanja Tarvainen, Ville Kolehmainen, Aki Pulkkinen, Marko Vauhkonen, Martin Schweiger, Simon R. Arridge, and Jari P. Kaipio. 2010. Approximation Error Approach for Compensating Modelling Errors in Optical Tomography: The Optical Society, Biomedical Optics (BIOMED)/ Digital Holography and Three‐Dimensional Imaging (DH) Technical Digest. BSuD48. 2010
• Tanja Tarvainen, Ville Kolehmainen, Jari P. Kaipio, Simon R. Arridge. 2010. Corrections to linear methods for diffuse optical tomography using approximation error modelling. Biomedical Optics Express 1 1: 209-222. 2010
• Tanja Tarvainen, Marko Vauhkonen, Simon R. Arridge. 2010. Image Reconstruction in Optical Tomography Using the Finite Element Solution of the Radiative Transfer Equation: The Optical Society, Biomedical Optics (BIOMED)/ Digital Holography and Three‐Dimensional Imaging (DH) Technical Digest. BSuD17. 2010
• Ossi Lehtikangas, Tanja Tarvainen, Ville Kolehmainen, Aki Pulkkinen, Simon R Arridge, Jari P Kaipio. 2010. Finite Element Solution of the Fokker-Planck Equation for Optical Tomography. Teoksessa: The Optical Society (toim.), Biomedical Optics (BIOMED)/ Digital Holography and Three‐Dimensional Imaging (DH) Technical Digest. ss. BSuE1. 2010
• Ossi Lehtikangas, Tanja Tarvainen, Ville Kolehmainen, Aki Pulkkinen, Simon R Arridge, Jari P Kaipio. 2010. Finite element approximation of the Fokker-Planck equation for diffuse optical tomography. JOURNAL OF QUANTITATIVE SPECTROSCOPY & RADIATIVE TRANSFER 111: 1406-1417. 2010
• Ossi Lehtikangas, Tanja Tarvainen, Ville Kolehmainen, Simon R. Arridge, Jari P. Kaipio. 2010. Finite element approximation of the Fokker-Planck equation for diffuse optical tomography. Teoksessa: (toim.), Proceeding of the XLIV Annual Conference of the Finnish Physical Society, March 11-13, 2010, Jyväskylä. ss. 81. 2010
• Kolehmainen V, Schweiger M, Nissilä I, Tarvainen T, Arridge SR, Kaipio JP. 2009. Approximation errors and model reduction in three-dimensional diffuse optical tomography. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A 26 10: 2257-2268. 2009
• Tarvainen T, Vauhkonen M, Arridge SR. 2008. Gauss-Newton reconstruction method for optical tomography using the finite element solution of the radiative transfer equation. JOURNAL OF QUANTITATIVE SPECTROSCOPY & RADIATIVE TRANSFER 109: 2767-2778. 2008
• Tarvainen T, Vauhkonen M, Kolehmainen V, Kaipio JP, Arridge SR. 2008. Utilizing the Radiative Transfer Equation in Optical Tomography, PIERS Proseedings. 730-735. 2008
• Tarvainen T, Vauhkonen M, Kolehmainen V, Kaipio JP, Arrige SR. 2008. Utilizing the radiative transfer equation in optical tomography PIERS ONLINE 4 6: 655-660. 2008
• Kervella M, Tarvainen T, Humeau A, L¿Huillier J-P. 2007. Efficiency of hybrid methods to model light propagation in biological tissues. WSEAS TRANSACTIONS ON SIGNAL PROCESSING 1 3: 9-16. 2007
• Tarvainen T., Vauhkonen M., Kolehmainen V., Kaipio J.. 2006. Modeling photon migration in tissues with the coupled rediative transfer equation and diffusion approximation. Teoksessa: (toim.), Biomedical Optics 2006. ss. 2006
• Vauhkonen M., Tarvainen T., Kolehmainen V., Kaipio J.. 2006. Finite element approximations for the radiative transfer equation, Biomedical Optics 2006. 2006
• V. Kolehmainen, S. R. Arridge, J. P. Kaipio, M. Schweiger, E. Somersalo, T. Tarvainen and M. Vauhkonen. 2006. Approximation Errors and Model Reduction in Optical Tomography: n/a, Engineering in Medicine and Biology Society, 2006. EMBS '06. 28th Annual International Conference of the IEEE.IEEE. 2659 - 2662. 2006
• Tarvainen T, Vauhkonen M, Kolehmainen V, Kaipio JP. 2006. Finite element model for the coupled radiative transfer equation and diffusion approximation. INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN ENGINEERING 65: 383-405. 2006
• Kervella M, Tarvainen T, Humeau A, L¿Huillier JP. 2006. Computational hybrid models for photon migration in biological tissues, Proceedings of the 5th WSEAS International Conference on System Science and Simulation in Engineering (ICOSSE'06). 172-177. 2006
• Arridge SR, Kaipio JP, Kolehmainen V, Schweiger M, Somersalo E, Tarvainen T, Vauhkonen M. 2006. Approximation errors and model reduction with an application in optical diffusion tomography INVERSE PROBLEMS 22: 175-195. 2006
• Arridge SR, Dorn O, Kaipio JP, Kolehmainen V, Schweiger M, Tarvainen T, Vauhkonen M, Zacharopoulos A. 2006. Reconstruction of subdomain boundaries of piecewise constant coefficients of the radiative transfer equation from optical tomography data. INVERSE PROBLEMS 22: 2175-2196. 2006
• Nissilä I, Noponen T, Kotilahti K, Katila T, Lipiäinen L, Tarvainen T, Schweiger M, Arridge S. 2005. Instrumentation and calibration methods for the multichannel measurement of phase and amplitude in optical tomography. REVIEW OF SCIENTIFIC INSTRUMENTS 76 044302. 2005
• Tarvainen T, Kolehmainen V, Vauhkonen M, Vanne A, Gibson AP, Schweiger M, Arridge SR, Kaipio JP. 2005. Computational calibration method for optical tomography. APPLIED OPTICS 44 10: 1879-1888. 2005
• Tarvainen T, Vauhkonen M, Kolehmainen V, Arridge SR, Kaipio JP. 2005. Coupled radiative transfer equation and diffusion approximation model for photon migration in turbid medium with low-scattering and non-scattering regions PHYSICS IN MEDICINE AND BIOLOGY 50: 4913-4930. 2005
• Tarvainen T, Vauhkonen M, Kolehmainen V, Kaipio JP. 2005. Coupled radiative transfer equation and diffusion approximation: Licha K, Cubeddu R, ECBO 2005 - European Conferences on Biomedical Optics.International Society for Optical Engineering, OSA. Proceedings of SPIE. 262-270. 2005
• Tarvainen T, Vauhkonen M, Kolehmainen V, Kaipio JP. 2005. Hybrid radiative-transfer-diffusion model for optical tomography. APPLIED OPTICS 44 6: 876-886. 2005
• Vauhkonen M, Vilhunen T, Kolehmainen V, Kaipio JP. 2004. Utilizing the radiative transfer equation in optical tomography, OSA Biomedical Optics, Topical Meetings.Optical Society of America. WF48. 2004
• Vilhunen T, Kolehmainen V, Vauhkonen M, Vanne A, Kaipio JP, Gibson A, Schweiger M, Arridge SR. 2004. Computational calibration method for optical tomography. Teoksessa: - (toim.), OSA Biomedical Optics, Topical meetings [CD-ROM]. ss. -. 2004
• Vilhunen T, Kolehmainen V, Vauhkonen M, Kaipio JP. 2003. A source model for optical diffusion tomography, Proceedings of 3rd World Congress on Industrial Process Tomography.The Virtual Centre for Industrial Process Tomography. 110-114. 2003
• Heikkinen LM, Vilhunen T, West RM, Vauhkonen M. 2002. Simultaneous reconstruction of electrode contact impedances and internal electrical properties: II. Laboratory experiments. MEASUREMENT SCIENCE AND TECHNOLOGY 13: 1855-1861. 2002
• Vilhunen T, Heikkinen LM, Savolainen T, Vauhkonen PJ, Lappalainen R, Kaipio JP, Vauhkonen M. 2002. Detection of faults in resistive coatings with an impedance-tomography-related approach. MEASUREMENT SCIENCE AND TECHNOLOGY 13: 865-872. 2002
• Vilhunen T, Kaipio JP, Vauhkonen PJ, Savolainen T, Vauhkonen M. 2002. Simultaneous reconstruction of electrode contact impedances and internal electrical properties: I. Theory. MEASUREMENT SCIENCE AND TECHNOLOGY 13: 1848-1854. 2002
• Vilhunen T, Vauhkonen M, Kolehmainen V, Kaipio JP. 2002. Linking the radiative transfer equation and the diffusion approximation, OSA Biomedical Topical Meetings.Optical Society of America. 12-14. 2002

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